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Diagnostic barcodes generated for the group Salmonella (average length - 10 kbp.)

Graphical COG plot

 

*Genes with the same numbers are orthologs
GenomeLocus tagAnnotationLocation in barcodeCore/Accessory gene
NC_011274 Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91 chromosome, complete genome.
1SG2468ptsJ,transcriptional regulator (dir) [2538241..2539533][1-1293]Core
2SG1799hypothetical protein (rev) [1872078..1872836][1344-2102]Core
3SG1979csgB,curlin minor subunit (rev) [2039847..2040302][2153-2608]Core
4SG4152dmsC2,dimethyl sulfoxide reductase subunit [2659-3432]Core
5SG2317aldolase (rev) [2380950..2381753][3483-4286]Core
6SG4031fmt,methionyl-tRNA formyltransferase (rev) [4337-5284]Core
7SG4125heme lyase subunit NrfE (dir) [4354953..4356689][5335-7071]Core
8SG3511hemX,uroporphyrinogen III C-methyltransferase [7122-8261]Core
9SG2222oxidoreductase (dir) [2275783..2277024][8312-9553]Core
10SG0102araD,L-ribulose-5-phosphate 4-epimerase [9604-10299]Core
NC_003197 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chromosome, complete genome.
1STM2436ptsJ,regulatory protein (dir) [2548503..2549795][1-1293]Core
2STM1317celG,hypothetical protein (dir) [1396312..1397070][1344-2102]Core
3STM1143csgB,curlin minor subunit (dir) [1231133..1231588][2153-2608]Core
4STM4307anaerobic dimethylsulfoxide reductase [2659-3432]Core
5STM2289aldolase (rev) [2396040..2396843][3483-4286]Core
6STM3407fmt,methionyl-tRNA formyltransferase (dir) [4337-5284]Core
7STM4281nrfE,formate-dependent nitrite reductase [5335-7557]Core
8STM3936hemX,uroporphyrinogen III C-methyltransferase [7608-8777]Core
9STM2186oxidoreductase (dir) [2281393..2282634][8828-10069]Core
10STM0101araD,L-ribulose-5-phosphate 4-epimerase [10120-10815]Core
NC_006905 Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 chromosome, complete genome.
1SC2434ptsJ,GntR family transcriptional regulator [1-1293]Core
2SC1338celG,hypothetical protein (dir) [1434975..1435733][1344-2102]Core
3SC1091csgB,curlin minor subunit (dir) [1211218..1211673][2153-2608]Core
4SC4185anaerobic dimethyl sulfoxide reductase [2659-3432]Core
5SC2292yfaU,aldolase (rev) [2410321..2411124][3483-4286]Core
6SC3343fmt,methionyl-tRNA formyltransferase (dir) [4337-5284]Core
7SC4160nrfE,formate-dependent nitrite reductase [5335-7557]Core
8SC3837hemX,uroporphyrinogen III C-methyltransferase [7608-8777]Core
9SC2203yeiT,oxidoreductase (dir) [2303907..2305148][8828-10069]Core
10SC0095araD,L-ribulose-5-phosphate 4-epimerase [10120-10815]Core
NC_011094 Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 chromosome, complete genome.
1SeSA_A2672GntR family transcriptional regulator [1-1293]Core
2SeSA_A1414hypothetical protein (dir) [1362984..1363742][1344-2102]Core
3SeSA_A1209csgB,curlin minor subunit (dir) [1189441..1189896][2153-2608]Core
4SeSA_A4562dmsC,dmso reductase anchor subunit (dir) [2659-3432]Core
5SeSA_A2517aldolase (rev) [2401941..2402744][3483-4286]Core
6SeSA_A3604fmt,methionyl-tRNA formyltransferase (dir) [4337-5284]Core
7SeSA_A4533ccmF,heme lyase subunit NrfE (dir) [4410387..4412123][5335-7071]Core
8SeSA_A4149uroporphyrinogen III C-methyltransferase [7122-8291]Core
9SeSA_A2425oxidoreductase (dir) [2301859..2303100][8342-9583]Core
10SeSA_A0112araD,L-ribulose-5-phosphate 4-epimerase [9634-10329]Core
NC_016856 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S chromosome, complete genome.
1STM14_2994ptsJ,putative regulatory protein (dir) [1-1293]Core
2STM14_1599celG,hypothetical protein (dir) [1406288..1407046][1344-2102]Core
3STM14_1309csgB,curlin minor subunit (dir) [1189295..1189750][2153-2608]Core
4STM14_5180putative anaerobic dimethylsulfoxide reductas [2659-3432]Core
5STM14_2826putative aldolase (rev) [2447593..2448396][3483-4286]Core
6STM14_4110fmt,methionyl-tRNA formyltransferase (dir) [4337-5284]Core
7STM14_5147nrfE,formate-dependent nitrite reductase [5335-7557]Core
8STM14_4735hemX,putative uroporphyrinogen II C-methyltransferase [7608-8777]Core
9STM14_2693putative oxidoreductase (dir) [2332946..2334187][8828-10069]Core
10STM14_0120araD,L-ribulose-5-phosphate 4-epimerase [10120-10815]Core
NC_015761 Salmonella bongori NCTC 12419, complete genome.
1SBG_2234ptsJ,transcriptional regulator (dir) [2432242..2433534][1-1293]Core
2SBG_1171hypothetical protein (dir) [1283748..1284506][1344-2102]Core
3SBG_0981csgB,nucleation component of curlin monomers [2153-2608]Core
4SBG_3751dmsC3,dimethyl sulfoxide reductase subunit [2659-3432]Core
5SBG_0952hpcH,2,4-dihydroxyhept-2-ene-1,7-dioic [3483-4274]Core
6SBG_3018fmt,methionyl-tRNA formyltransferase (dir) [4325-5272]Core
7SBG_3376ccmF,cytochrome c-type biogenesis protein [5323-7254]Core
8SBG_3475hemX,uroporphyrinogen III methylase (rev) [7305-8486]Core
9SBG_1998oxidoreductase (dir) [2173829..2175070][8537-9778]Core
10SBG_0087araD,L-ribulose-5-phosphate 4-epimerase [9829-10524]Core
NC_011080 Salmonella enterica subsp. enterica serovar Newport str. SL254 chromosome, complete genome.
1SNSL254_A2630GntR family transcriptional regulator [1-1293]Core
2SNSL254_A1431hypothetical protein (dir) [1398282..1399040][1344-2102]Core
3SNSL254_A1239csgB,curlin minor subunit (dir) [1232920..1233375][2153-2608]Core
4SNSL254_A4653dmsC,dmso reductase anchor subunit (dir) [2659-3432]Core
5SNSL254_A2474aldolase (rev) [2397802..2398605][3483-4286]Core
6SNSL254_A3676fmt,methionyl-tRNA formyltransferase (dir) [4337-5284]Core
7SNSL254_A4626heme lyase subunit NrfE (dir) [4510933..4513155][5335-7557]Core
8SNSL254_A4218uroporphyrinogen III C-methyltransferase [7608-8777]Core
9SNSL254_A2376oxidoreductase (dir) [2292617..2293858][8828-10069]Core
10SNSL254_A0108araD,L-ribulose-5-phosphate 4-epimerase [10120-10815]Core
NC_011205 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 chromosome, complete genome.
1SeD_A2802GntR family transcriptional regulator [1-1293]Core
2SeD_A2027hypothetical protein (rev) [1960557..1961315][1344-2102]Core
3SeD_A2230csgB,curlin minor subunit (rev) [2135409..2135864][2153-2608]Core
4SeD_A4702dmsC,dmso reductase anchor subunit (dir) [2659-3432]Core
5SeD_A2633aldolase (rev) [2517192..2517995][3483-4286]Core
6SeD_A3774fmt,methionyl-tRNA formyltransferase (dir) [4337-5284]Core
7SeD_A4675ccmF,heme lyase subunit NrfE (dir) [4535286..4537508][5335-7557]Core
8SeD_A4325uroporphyrinogen III C-methyltransferase [7608-8777]Core
9SeD_A2533oxidoreductase (dir) [2411938..2413179][8828-10069]Core
10SeD_A0105araD,L-ribulose-5-phosphate 4-epimerase [10120-10815]Core
NC_003198 Salmonella enterica subsp. enterica serovar Typhi str. CT18 chromosome, complete genome.
1STY2674ptsJ,transcriptional regulator (dir) [2509322..2510614][1-1293]Core
2STY1796hypothetical protein (rev) [1716184..1716942][1344-2102]Core
3STY1180csgB,curlin minor subunit (dir) [1141409..1141864][2153-2608]Core
4STY4508dmsC,dimethyl sulfoxide reductase subunit [2659-3432]Core
5STY2519aldolase (rev) [2353637..2354440][3483-4286]Core
6STY4390fmt,methionyl-tRNA formyltransferase (rev) [4337-5284]Core
7STY4479heme lyase subunit NrfE (dir) [4364950..4366686][5335-7071]Core
8STY3623hemX,uroporphyrinogen III C-methyltransferase [7122-8291]Core
9STY2416oxidoreductase (dir) [2246976..2248217][8342-9583]Core
10STY0118araD,L-ribulose-5-phosphate 4-epimerase [9634-10329]Core
NC_006511 Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 chromosome, complete genome.
1SPA0429ptsJ,transcriptional regulator (rev) [497669..498961][1-1293]Core
2SPA1527celG,hypothetical protein (rev) [1601771..1602529][1344-2102]Core
3SPA1708csgB,curlin monomer nucleation protein [2153-2608]Core
4SPA4125dmsC,anaerobic dimethyl sulfoxide reductase [2659-3432]Core
5SPA05742,4-dihydroxyhept-2-ene-1,7-dioic acid [3483-4286]Core
6SPA3274fmt,methionyl-tRNA formyltransferase (dir) [4337-5284]Core
7SPA4098nrfE,cytochrome c-type biogenesis protein [5335-7071]Core
8SPA3777hemX,uroporphyrinogen III methylase (rev) [7122-8291]Core
9SPA0665oxidoreductase (rev) [748627..749868][8342-9583]Core
10SPA0103araD,L-ribulose-5-phosphate 4-epimerase [9634-10329]Core
NC_016810 Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344, complete genome.
1SL1344_2399ptsJ,putative transcriptional regulator [1-1293]Core
2SL1344_1252hypothetical protein (dir) [1353165..1353923][1344-2102]Core
3SL1344_1080csgB,nucleation component of curlin monomers [2153-2608]Core
4SL1344_4244dmsC,putative dimethyl sulfoxide reductase [2659-3432]Core
5SL1344_2258putative 2,4-dihydroxyhept-2-ene-1,7-dioic [3483-4286]Core
6SL1344_3374fmt,methionyl-tRNA formyltransferase (dir) [4337-5284]Core
7SL1344_4217nrfE,formate-dependent nitrite reductase, [5335-7557]Core
8SL1344_3891hemX,uroporphyrinogen III methylase (rev) [7608-8777]Core
9SL1344_2163putative oxidoreductase (dir) [2279109..2280350][8828-10069]Core
10SL1344_0101araD,L-ribulose-5-phosphate 4-epimerase [10120-10815]Core
NC_016832 Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12, complete genome.
1STBHUCCB_4570transcriptional regulatory protein ptsJ [1-1293]Core
2STBHUCCB_12850hypothetical protein (dir) [1263161..1263919][1344-2102]Core
3STBHUCCB_18880Minor curlin subunit (rev) [1836354..1836809][2153-2608]Core
4STBHUCCB_44590Dmso reductase anchor subunit (dir) [4371931..4372704][2659-3432]Core
5STBHUCCB_61502-keto-3-deoxy-L-rhamnonate aldolase (dir) [3483-4286]Core
6STBHUCCB_43340Methionyl-tRNA formyltransferase (rev) [4337-5284]Core
7STBHUCCB_44280Cytochrome c-type biogenesis protein nrfE [5335-7071]Core
8STBHUCCB_35490Uroporphyrinogen III methylase (dir) [3450977..3452146][7122-8291]Core
9STBHUCCB_7170putative oxidoreductase yeiT (rev) [755674..756915][8342-9583]Core
10STBHUCCB_1180L-ribulose-5-phosphate 4-epimerase ulaF [9634-10398]Core
NC_016831 Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078 chromosome, complete genome.
1SPUL_0445ptsJ,putative transcriptional regulator [1-1293]Core
2SPUL_1134hypothetical protein (dir) [1161576..1162334][1344-2102]Core
3SPUL_0942csgB,nucleation component of curlin monomers [2153-2608]Core
4SPUL_4299dmsC2,putative dimethyl sulfoxide reductase [2659-3432]Core
5SPUL_0602putative 2,4-dihydroxyhept-2-ene-1,7-dioic [3483-4286]Core
6SPUL_4174fmt,methionyl-tRNA formyltransferase (rev) [4337-5284]Core
7SPUL_4272cytochrome c-type biogenesis protein (dir) [5335-7071]Core
8SPUL_3493hypothetical protein (dir) [3510044..3511213][7122-8291]Core
9SPUL_0703putative oxidoreductase (rev) [757526..758767][8342-9583]Core
10SPUL_0106araD,L-ribulose-5-phosphate 4-epimerase [9634-10329]Core
NC_016860 Salmonella enterica subsp. enterica serovar Typhimurium str. T000240, complete genome.
1STMDT12_C24550GntR family transcriptional regulator [1-1293]Core
2STMDT12_C13340hypothetical protein (dir) [1393999..1394757][1344-2102]Core
3STMDT12_C11610csgB,minor curlin protein CsgB (dir) [1228792..1229274][2153-2635]Core
4STMDT12_C44390DMSO reductase anchor subunit (dir) [4652336..4653109][2686-3459]Core
5STMDT12_C23100putative aldolase (rev) [2391583..2392386][3510-4313]Core
6STMDT12_C34610fmt,methionyl-tRNA formyltransferase (dir) [4364-5311]Core
7STMDT12_C44160formate-dependent nitrite reductase (dir) [5362-7584]Core
8STMDT12_C40860putative uroporphyrinogen II C-methyltransferase [7635-8804]Core
9STMDT12_C22070putative oxidoreductase (dir) [2276935..2278176][8855-10096]Core
10STMDT12_C01010araD,L-ribulose-5-phosphate 4-epimerase [10147-10842]Core
NC_016863 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 chromosome, complete genome.
1STMUK_2468ptsJ,putative regulatory protein (dir) [1-1293]Core
2STMUK_1284celG,hypothetical protein (dir) [1354478..1355236][1344-2102]Core
3STMUK_1111csgB,curlin minor subunit (dir) [1188586..1189041][2153-2608]Core
4STMUK_4292putative anaerobic dimethylsulfoxide reductas [2659-3432]Core
5STMUK_2319putative aldolase (rev) [2395785..2396588][3483-4286]Core
6STMUK_3393fmt,methionyl-tRNA formyltransferase (dir) [4337-5284]Core
7STMUK_4266nrfE,formate-dependent nitrite reductase [5335-7557]Core
8STMUK_3922hemX,putative uroporphyrinogen II C-methyltransferase [7608-8777]Core
9STMUK_2216putative oxidoreductase (dir) [2281138..2282379][8828-10069]Core
10STMUK_0102araD,L-ribulose-5-phosphate 4-epimerase [10120-10815]Core
NC_016857 Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74 chromosome, complete genome.
1STM474_2539ptsJ,putative regulatory protein (dir) [1-1293]Core
2STM474_1322chbg,hypothetical protein (dir) [1353165..1353923][1344-2102]Core
3STM474_1138csgB,curlin minor subunit (dir) [1187273..1187728][2153-2608]Core
4STM474_4503dmsC,dmso reductase anchor subunit (dir) [2659-3432]Core
5STM474_2385putative aldolase (rev) [2393756..2394559][3483-4286]Core
6STM474_3572fmt,methionyl-tRNA formyltransferase (dir) [4337-5284]Core
7STM474_4477nrfE,formate-dependent nitrite reductase [5335-7557]Core
8STM474_4114hemX,putative uroporphyrinogen II C-methyltransferase [7608-8777]Core
9STM474_2275putative oxidoreductase (dir) [2279067..2280350][8828-10111]Core
10STM474_0104araD,L-ribulose-5-phosphate 4-epimerase [10162-10857]Core
NC_011083 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 chromosome, complete genome.
1SeHA_C2696GntR family transcriptional regulator [1-1293]Core
2SeHA_C1446hypothetical protein (dir) [1401357..1402115][1344-2102]Core
3SeHA_C1254csgB,curlin minor subunit (dir) [1235481..1235936][2153-2608]Core
4SeHA_C4653dmsC,dmso reductase anchor subunit (dir) [2659-3432]Core
5SeHA_C2529aldolase (rev) [2443602..2444405][3483-4286]Core
6SeHA_C3711fmt,methionyl-tRNA formyltransferase (dir) [4337-5284]Core
7SeHA_C4624ccmF,heme lyase subunit NrfE (dir) [4515782..4517518][5335-7071]Core
8SeHA_C4266uroporphyrinogen III C-methyltransferase [7122-8291]Core
9SeHA_C2421oxidoreductase (dir) [2328981..2330222][8342-9583]Core
10SeHA_C0107araD,L-ribulose-5-phosphate 4-epimerase [9634-10329]Core
NC_011147 Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601 chromosome, complete genome.
1SSPA0403transcriptional regulator (rev) [497703..498995][1-1293]Core
2SSPA1418hypothetical protein (rev) [1596952..1597710][1344-2102]Core
3SSPA1589curlin minor subunit (rev) [1762471..1762926][2153-2608]Core
4SSPA3830anaerobic dimethyl sulfoxide reductase [2659-3432]Core
5SSPA0538aldolase (dir) [648482..649285][3483-4286]Core
6SSPA3053fmt,methionyl-tRNA formyltransferase (dir) [4337-5284]Core
7SSPA3805heme lyase subunit NrfE (dir) [4267427..4269163][5335-7071]Core
8SSPA3516uroporphyrinogen III C-methyltransferase [7122-8291]Core
9SSPA0624oxidoreductase (rev) [748573..749814][8342-9583]Core
10SSPA0099araD,L-ribulose-5-phosphate 4-epimerase [9634-10329]Core
NC_004631 Salmonella enterica subsp. enterica serovar Typhi str. Ty2 chromosome, complete genome.
1t0421ptsJ,transcriptional regulator (rev) [494098..495390][1-1293]Core
2t1196hypothetical protein (dir) [1264188..1264946][1344-2102]Core
3t1777csgB,curlin minor subunit (rev) [1839319..1839774][2153-2608]Core
4t4214dmsC,dimethyl sulfoxide reductase subunit [2659-3432]Core
5t0574aldolase (dir) [650272..651075][3483-4286]Core
6t4097fmt,methionyl-tRNA formyltransferase (rev) [4337-5284]Core
7t4187heme lyase subunit NrfE (dir) [4349600..4351336][5335-7071]Core
8t3361hemX,uroporphyrinogen III C-methyltransferase [7122-8291]Core
9t0669oxidoreductase (rev) [755720..756961][8342-9583]Core
10t0105araD,L-ribulose-5-phosphate 4-epimerase [9634-10329]Core
NC_011149 Salmonella enterica subsp. enterica serovar Agona str. SL483 chromosome, complete genome.
1SeAg_B2581GntR family transcriptional regulator [1-1293]Core
2SeAg_B1854hypothetical protein (rev) [1816210..1816968][1344-2102]Core
3SeAg_B2047csgB,curlin minor subunit (rev) [1982528..1982983][2153-2608]Core
4SeAg_B4570dmsC,dmso reductase anchor subunit (dir) [2659-3432]Core
5SeAg_B2425aldolase (rev) [2347535..2348338][3483-4286]Core
6SeAg_B3603fmt,methionyl-tRNA formyltransferase (dir) [4337-5284]Core
7SeAg_B4540heme lyase subunit NrfE (dir) [4439396..4441618][5335-7557]Core
8SeAg_B4164uroporphyrinogen III C-methyltransferase [7608-8777]Core
9SeAg_B2332oxidoreductase (dir) [2246983..2248224][8828-10069]Core
10SeAg_B0112araD,L-ribulose-5-phosphate 4-epimerase [10120-10815]Core
NC_012125 Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594 chromosome, complete genome.
1SPC_1223ptsJ,transcriptional regulator (rev) [1289302..1290594][1-1293]Core
2SPC_2413celG,hypothetical protein (rev) [2467916..2468674][1344-2102]Core
3SPC_2607csgB,curlin minor subunit (rev) [2644062..2644544][2153-2635]Core
4SPC_4370dmsC,dimethyl sulfoxide reductase subunit [2686-3459]Core
5SPC_1422aldolase (dir) [1483502..1484305][3510-4313]Core
6SPC_3476fmt,methionyl-tRNA formyltransferase (dir) [4364-5311]Core
7SPC_4344nrfE,heme lyase subunit NrfE (dir) [4449707..4451929][5362-7584]Core
8SPC_4046hemX,uroporphyrinogen III C-methyltransferase [7635-8804]Core
9SPC_1516oxidoreductase (rev) [1588064..1589347][8855-10138]Core
10SPC_0108araD,L-ribulose-5-phosphate 4-epimerase [10189-10953]Core
NC_017046 Salmonella enterica subsp. enterica serovar Typhimurium str. 798 chromosome, complete genome.
1UMN798_2631ptsJ,transcriptional regulator (dir) [2545584..2546876][1-1293]Core
2UMN798_1374hypothetical protein (dir) [1353240..1353998][1344-2102]Core
3UMN798_1189csgB,curlin monomer nucleation protein [2153-2635]Core
4UMN798_4668dmsC,dimethyl sulfoxide reductase subunit [2686-3459]Core
5UMN798_24702,4-dihydroxyhept-2-ene-1,7-dioic acid [3510-4313]Core
6UMN798_3707fmt,methionyl-tRNA formyltransferase (dir) [4364-5311]Core
7UMN798_4638nrfE,formate-dependent nitrite reductase, [5362-7584]Core
8UMN798_4273hemX,uroporphyrinogen III methylase (rev) [7635-8804]Core
9UMN798_2360oxidoreductase (dir) [2278430..2279713][8855-10138]Core
10UMN798_0110araD,L-ribulose-5-phosphate 4-epimerase [10189-10953]Core

Contact Information

Company Name: University of Pretoria
Website: http://bargene.bi.up.ac.za/
Email: oleg.reva@up.ac.za; repierneef@live.com; talk2adey100@gmail ;
Phone number:+27-12-420-5802